Revision 1

#93589Store at -20C

1 Kit

(8 x 20 microliters)

Cell Signaling Technology

Orders: 877-616-CELL (2355) [email protected]

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For Research Use Only. Not for Use in Diagnostic Procedures.
Product Includes Product # Quantity Mol. Wt Isotype/Source
Brg1 (E8V5B) Mouse mAb 72182 20 µl 220 kDa Mouse IgG1
PBRM1/BAF180 (D4L9X) Rabbit mAb 38439 20 µl 205 kDa Rabbit IgG
SMARCB1/BAF47 (D8M1X) Rabbit mAb 91735 20 µl 44 kDa Rabbit IgG
BRM (D9E8B) XP® Rabbit mAb 11966 20 µl 200 kDa Rabbit IgG
ARID1A/BAF250A (D2A8U) Rabbit mAb 12354 20 µl 270 kDa Rabbit IgG
SS18-SSX (E9X9V) XP® Rabbit mAb 72364 20 µl 65, 75 kDa Rabbit IgG
ARID1B/BAF250B (E1U7D) Rabbit mAb 65747 20 µl 250, 280 kDa Rabbit IgG
SS18 (D6I4Z) Rabbit mAb 21792 20 µl Iso1 60, Iso2 50 kDa Rabbit IgG
Anti-rabbit IgG, HRP-linked Antibody 7074 100 µl Goat 
Anti-mouse IgG, HRP-linked Antibody 7076 100 µl Horse 

Please visit cellsignal.com for individual component applications, species cross-reactivity, dilutions, protocols, and additional product information.

Description

The BAF Complex IHC Antibody Sampler Kit provides an economical means of detecting BAF complex members in formalin-fixed, paraffin-embedded tissue samples.

Background

The modulation of chromatin structure is an essential component in the regulation of transcriptional activation and repression. Modifications can be made by at least two evolutionarily conserved strategies, through the disruption of histone-DNA contacts by ATP-dependent chromatin remodelers, or by histone tail modifications including methylation and acetylation. One of the four classes of ATP-dependent histone remodelers is the SWI/SNF complex, the central catalytic subunit of which is Brg1 or the highly related protein hBRM (1). This SWI/SNF complex contains varying subunits but its association with either Brg1 or hBRM remains constant (1). SWI/SNF complexes have been shown to regulate gene activation, cell growth, the cell cycle, and differentiation (1). Brg1/hBRM have been shown to regulate transcription through enhancing transcriptional activation of glucocorticoid receptors (2). Although usually associated with transcriptional activation, Brg1/hBRM have also been found in complexes associated with transcriptional repression, including HDACs, Rb, and Tif1β (3-5). Brg1/hBRM plays a vital role in the regulation of gene transcription during early mammalian embryogenesis. In addition, Brg1/hBRM also plays a role as a tumor suppressor and Brg1 is mutated in several tumor cell lines (6-8).

  1. Trotter, K.W. and Archer, T.K. (2008) Nucl Recept Signal 6, e004.
  2. Trotter, K.W. and Archer, T.K. (2007) Mol Cell Endocrinol 265-266, 162-7.
  3. Sif, S. et al. (2001) Genes Dev 15, 603-18.
  4. Zhang, H.S. et al. (2000) Cell 101, 79-89.
  5. Underhill, C. et al. (2000) J Biol Chem 275, 40463-70.
  6. Magnani, L. and Cabot, R.A. (2009) Reproduction 137, 23-33.
  7. Medina, P.P. et al. (2008) Epigenetics 3, 64-8.
  8. Medina, P.P. et al. (2008) Hum Mutat 29, 617-22.

Background References

    Trademarks and Patents

    Cell Signaling Technology is a trademark of Cell Signaling Technology, Inc.
    XP is a registered trademark of Cell Signaling Technology, Inc.
    All other trademarks are the property of their respective owners. Visit cellsignal.com/trademarks for more information.

    Limited Uses

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    Products are labeled with For Research Use Only or a similar labeling statement and have not been approved, cleared, or licensed by the FDA or other regulatory foreign or domestic entity, for any purpose. Customer shall not use any Product for any diagnostic or therapeutic purpose, or otherwise in any manner that conflicts with its labeling statement. Products sold or licensed by CST are provided for Customer as the end-user and solely for research and development uses. Any use of Product for diagnostic, prophylactic or therapeutic purposes, or any purchase of Product for resale (alone or as a component) or other commercial purpose, requires a separate license from CST. Customer shall (a) not sell, license, loan, donate or otherwise transfer or make available any Product to any third party, whether alone or in combination with other materials, or use the Products to manufacture any commercial products, (b) not copy, modify, reverse engineer, decompile, disassemble or otherwise attempt to discover the underlying structure or technology of the Products, or use the Products for the purpose of developing any products or services that would compete with CST products or services, (c) not alter or remove from the Products any trademarks, trade names, logos, patent or copyright notices or markings, (d) use the Products solely in accordance with CST Product Terms of Sale and any applicable documentation, and (e) comply with any license, terms of service or similar agreement with respect to any third party products or services used by Customer in connection with the Products.

    Revision 1
    #93589

    BAF Complex IHC Antibody Sampler Kit

    BAF Complex IHC Antibody Sampler Kit: Image 1 Expand Image
    Simple Western™ analysis of lysates (1 mg/mL) from A549 cells using BRM (D9E8B) XP® Rabbit mAb #11966. The virtual lane view (left) shows the target band (as indicated) at 1:10 and 1:50 dilutions of primary antibody. The corresponding electropherogram view (right) plots chemiluminescence by molecular weight along the capillary at 1:10 (blue line) and 1:50 (green line) dilutions of primary antibody. This experiment was performed under reducing conditions on the Jess™ ​​​​​​​ Simple Western instrument from ProteinSimple, a BioTechne brand, using the 12-230 kDa separation module.
    BAF Complex IHC Antibody Sampler Kit: Image 2 Expand Image
    Western blot analysis of extracts from control HeLa cells (Lane 1) or HeLa cells with a targeted mutation in the gene encoding BRM (Lane 2) using BRM (D9E8B) XP® Rabbit mAb (upper) or β-Actin (D6A8) Rabbit mAb #8457 (lower). The change in BRM molecular weight in the mutated HeLa cells confirms the specificity of the antibody for BRM.
    BAF Complex IHC Antibody Sampler Kit: Image 3 Expand Image
    Immunohistochemical analysis of paraffin-embedded human prostate carcinoma using BRM (D9E8B) XP(R) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 4 Expand Image
    Western blot analysis of extracts from various cell lines using ARID1A/BAF250A (D2A8U) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 5 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from NCCIT cells and ARID1A/BAF250A (D2A8U) Rabbit mAb, using SimpleChIP® Plus Enzymatic Chromatin IP Kit (Magnetic Beads) #9005. DNA Libraries were prepared using DNA Library Prep Kit for Illumina (ChIP-seq, CUT&RUN) #56795. The figure shows binding across Oct-4/POU5F1, a known target gene of ARID1A (see additional figure containing ChIP-qPCR data).
    BAF Complex IHC Antibody Sampler Kit: Image 6 Expand Image
    Western blot analysis of extracts from various cell lines using SS18 (D6I4Z) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 7 Expand Image
    Western blot analysis of extracts from various cell lines using PBRM1/BAF180 (D4L9X) Rabbit mAb (upper) or α-Actinin (D6F6) XP® Rabbit mAb #6487 (lower). As expected, HCC1143 cells are negative for PBRM1/BAF180 expression.
    BAF Complex IHC Antibody Sampler Kit: Image 8 Expand Image
    Western blot analysis of extracts from various cell lines using ARID1B/BAF250B (E1U7D) Rabbit mAb (upper) and α-Actinin (D6F6) Rabbit mAb #6487 (lower). MIA PaCa-2 cells do not express ARID1B/BAF250B protein.
    BAF Complex IHC Antibody Sampler Kit: Image 9 Expand Image
    After the primary antibody is bound to the target protein, a complex with HRP-linked secondary antibody is formed. The LumiGLO® is added and emits light during enzyme catalyzed decomposition.
    BAF Complex IHC Antibody Sampler Kit: Image 10 Expand Image
    After the primary antibody is bound to the target protein, a complex with HRP-linked secondary antibody is formed. The LumiGLO* is added and emits light during enzyme catalyzed decomposition.
    BAF Complex IHC Antibody Sampler Kit: Image 11 Expand Image
    Western blot analysis of extracts from various cell lines using Brg1 (E8V5B) Mouse mAb (upper) and α-Actinin (D6F6) XP® Rabbit mAb #6487 (lower).
    BAF Complex IHC Antibody Sampler Kit: Image 12 Expand Image
    Western blot analysis of extracts from various cell lines using SS18-SSX (E9X9V) XP® Rabbit mAb (upper) or β-Actin (D6A8) Rabbit mAb #8457 (lower). ASKA is a synovial sarcoma cell line with an SS18-SSX1 fusion, while SYO-1 is a synovial sarcoma cell line with an SS18-SSX2 fusion. As shown, SS18-SSX (E9X9V) XP® Rabbit mAb only detects the fusion protein and not WT proteins. Cell lysates were isolated and provided by the Kadoch laboratory.
    BAF Complex IHC Antibody Sampler Kit: Image 13 Expand Image
    Western blot analysis of extracts from various cell lines using SMARCB1/BAF47 (D8M1X) Rabbit mab (upper) or β-Actin (13E5) Rabbit mAb #4970 (lower).
    BAF Complex IHC Antibody Sampler Kit: Image 14 Expand Image
    Immunohistochemical analysis of paraffin-embedded human colon carcinoma using BRM (D9E8B) XP(R) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 15 Expand Image
    Western blot analysis of extracts from various cell lines using BRM (D9E8B) XP® Rabbit mAb (upper) or Brg1 (A52) Antibody #3508 (lower).
    BAF Complex IHC Antibody Sampler Kit: Image 16 Expand Image
    Western blot analysis of T-47D and Jurkat cell extracts using ARID1A/BAF250A (D2A8U) Rabbit mAb (upper) or ß-Actin (D6A8) Rabbit mAb #8457 (lower). Additional ARID1A/BAF250A degradation products may be detected in some cell extracts between 135kDa-250kDa, which are absent in the ARID1A/BAF250A negative T-47D cell line.
    BAF Complex IHC Antibody Sampler Kit: Image 17 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from NCCIT cells and ARID1A/BAF250A (D2A8U) Rabbit mAb, using SimpleChIP® Plus Enzymatic Chromatin IP Kit (Magnetic Beads) #9005. DNA Libraries were prepared using DNA Library Prep Kit for Illumina (ChIP-seq, CUT&RUN) #56795. The figure shows binding across chromosome 6 (upper), including Oct-4/POU5F1 (lower), a known target gene of ARID1A (see additional figure containing ChIP-qPCR data).
    BAF Complex IHC Antibody Sampler Kit: Image 18 Expand Image
    Immunoprecipitation of SS18 from ACHN cell extracts. Lane 1 is 10% input, lane 2 is Rabbit (DA1E) mAb IgG XP® Isotype control #3900, and lane 3 is SS18 (D6I4Z) Rabbit mAb. Western blot analysis was performed using SS18 (D6I4Z) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 19 Expand Image
    Immunohistochemical analysis of paraffin-embedded human endometrioid adenocarcinoma using PBRM1/BAF180 (D4L9X) Rabbit mAb performed on the Leica® BOND Rx.
    BAF Complex IHC Antibody Sampler Kit: Image 20 Expand Image
    Immunohistochemical analysis of paraffin-embedded human colon carcinoma using Brg1 (E8V5B) Mouse mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 21 Expand Image
    Immunoprecipitation of SS18-SSX (E9X9V) XP® Rabbit mAb from ASKA cell extracts. Lane 1 is 10% input, lane 2 is Rabbit (DA1E) mAb IgG XP® Isotype Control #3900, and lane 3 is SS18-SSX (E9X9V) XP® Rabbit mAb. Western blot analysis was performed using SS18-SSX (E9X9V) XP® Rabbit mAb. Mouse Anti-rabbit IgG (Conformation Specific) (L27A9) mAb (HRP Conjugate) #5127 was used as the secondary antibody. Cell lysates were isolated and provided by the Kadoch laboratory.
    BAF Complex IHC Antibody Sampler Kit: Image 22 Expand Image
    Immunoprecipitation of SMARCB1/BAF47 from 293T cell extracts. Lane 1 is 10% input, lane 2 is Rabbit (DA1E) mAb XP® Isotype Control #3900, and lane 3 is SMARCB1/BAF47 (D8M1X) Rabbit mAb. Western blot analysis was performed usingSMARCB1/BAF47 (D8M1X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 23 Expand Image
    Immunohistochemical analysis of paraffin-embedded human clear cell adenocarcinoma of the ovary using BRM (D9E8B) XP(R) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 24 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from NCCIT cells and either ARID1A/BAF250A (D2A8U) Rabbit mAb or Normal Rabbit IgG #2729 using SimpleChIP® Plus Enzymatic Chromatin IP Kit (Magnetic Beads) #9005. The enriched DNA was quantified by real-time PCR using SimpleChIP® Human Oct-4 Promoter Primers #4641, SimpleChIP® Human Sox2 Promoter Primers #4649, and SimpleChIP® Human α Satellite Repeat Primers #4486. The amount of immunoprecipitated DNA in each sample is represented as signal relative to the total amount of input chromatin, which is equivalent to one.
    BAF Complex IHC Antibody Sampler Kit: Image 25 Expand Image
    Immunohistochemical analysis of mouse colon using ARID1A/BAF250A (D2A8U) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 26 Expand Image
    Immunohistochemical analysis of paraffin-embedded human colon carcinoma using SS18 (D6I4Z) Rabbit mAb (left) compared to concentration matched Rabbit (DA1E) mAb IgG XP® Isotype Control #3900 (right).
    BAF Complex IHC Antibody Sampler Kit: Image 27 Expand Image
    Immunohistochemical analysis of paraffin-embedded human colon carcinoma using PBRM1/BAF180 (D4L9X) Rabbit mAb performed on the Leica® BOND Rx.
    BAF Complex IHC Antibody Sampler Kit: Image 28 Expand Image
    Immunohistochemical analysis of paraffin-embedded SH-SY5Y cell pellet (left, positive) or MIA PaCa-2 cell pellet (right, negative) using ARID1B/BAF250B (E1U7D) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 29 Expand Image
    Immunohistochemical analysis of paraffin-embedded human squamous cell carcinoma of the lung using Brg1 (E8V5B) Mouse mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 30 Expand Image
    Immunohistochemical analysis of paraffin-embedded human synovial sarcoma using SS18-SSX (E9X9V) XP® Rabbit mAb performed on the Leica® BOND Rx.
    BAF Complex IHC Antibody Sampler Kit: Image 31 Expand Image
    Immunohistochemical analysis of paraffin-embedded human colon carcinoma using SMARCB1/BAF47 (D8M1X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 32 Expand Image
    Immunohistochemical analysis of paraffin-embedded HeLa (left) and NCCIT (right) cell pellets using BRM (D9E8B) XP(R) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 33 Expand Image
    Immunohistochemical analysis of paraffin-embedded cell pellets, COS-7 (left) or T-47D (right), using ARID1A/BAF250A (D2A8U) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 34 Expand Image
    Immunohistochemical analysis of paraffin-embedded human squamous cell lung carcinoma using SS18 (D6I4Z) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 35 Expand Image
    Immunohistochemical analysis of paraffin-embedded normal human breast using PBRM1/BAF180 (D4L9X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 36 Expand Image
    Immunohistochemical analysis of paraffin-embedded human endometrioid adenocarcinoma using ARID1B/BAF250B (E1U7D) Rabbit mAb in the presence of control peptide (left) or antigen-specific peptide (right).
    BAF Complex IHC Antibody Sampler Kit: Image 37 Expand Image
    Immunohistochemical analysis of paraffin-embedded SW620 cell pellet (left, positive) or A549 cell pellet (right, negative) using Brg1 (E8V5B) Mouse mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 38 Expand Image
    Immunohistochemical analysis of paraffin-embedded ASKA cell pellet (left, positive) or HeLa cell pellet (right, negative) using SS18-SSX (E9X9V) XP® Rabbit mAb. Cell pellets were isolated and provided by the Kadoch laboratory.
    BAF Complex IHC Antibody Sampler Kit: Image 39 Expand Image
    Immunohistochemical analysis of paraffin-embedded mouse colon using SMARCB1/BAF47 (D8M1X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 40 Expand Image
    Immunohistochemical analysis of paraffin-embedded human lung adenosquamous carcinoma using ARID1A/BAF250A (D2A8U) Rabbit mAb in the presence of control peptide (left) or antigen-specific peptide (right).
    BAF Complex IHC Antibody Sampler Kit: Image 41 Expand Image
    Immunohistochemical analysis of paraffin-embedded human serous papillary carcinoma of the ovary using SS18 (D6I4Z) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 42 Expand Image
    Immunohistochemical analysis of paraffin-embedded normal human colon using PBRM1/BAF180 (D4L9X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 43 Expand Image
    Immunohistochemical analysis of paraffin-embedded human colon carcinoma using ARID1B/BAF250B (E1U7D) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 44 Expand Image
    Immunohistochemical analysis of paraffin-embedded human prostate carcinoma using Brg1 (E8V5B) Mouse mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 45 Expand Image
    Immunohistochemical analysis of paraffin-embedded human prostate adenocarcinoma (left) and adenoid cystic carcinoma of the trachea (right) using SS18-SSX (E9X9V) XP® Rabbit mAb (upper) or SS18 (D6I4Z) Rabbit mAb #21792 (lower). Note the absence of the fusion protein in each carcinoma.
    BAF Complex IHC Antibody Sampler Kit: Image 46 Expand Image
    Immunohistochemical analysis of paraffin-embedded endometrioid adenocarcinoma using SMARCB1/BAF47 (D8M1X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 47 Expand Image
    Immunohistochemical analysis of paraffin-embedded human prostate carcinoma using SS18 (D6I4Z) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 48 Expand Image
    Immunohistochemical analysis of paraffin-embedded human squamous cell carcinoma of the tonsil using PBRM1/BAF180 (D4L9X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 49 Expand Image
    Immunohistochemical analysis of paraffin-embedded human non-small cell lung carcinoma using ARID1B/BAF250B (E1U7D) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 50 Expand Image
    Immunohistochemical analysis of paraffin-embedded human synovial sarcoma using SS18-SSX (E9X9V) XP® Rabbit mAb (left) compared to concentration-matched Rabbit (DA1E) mAb IgG XP® Isotype Control #3900 (right).
    BAF Complex IHC Antibody Sampler Kit: Image 51 Expand Image
    Immunohistochemical analysis of paraffin-embedded HeLa (left) and A204 (right) cell pellets using SMARCB1/BAF47 (D8M1X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 52 Expand Image
    Confocal immunofluorescent analysis of HeLa (positive, left) and NCCIT (negative, right) cells using BRM (D9E8B) XP® Rabbit mAb (green) and β-Actin (8H10D10) Mouse mAb #3700 (red).
    BAF Complex IHC Antibody Sampler Kit: Image 53 Expand Image
    Immunohistochemical analysis of paraffin-embedded human synovial sarcoma using SS18 (D6I4Z) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 54 Expand Image
    Immunohistochemical analysis of paraffin-embedded human ovarian clear cell carcinoma using PBRM1/BAF180 (D4L9X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 55 Expand Image
    Immunohistochemical analysis of paraffin-embedded human prostate carcinoma using ARID1B/BAF250B (E1U7D) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 56 Expand Image
    Immunohistochemical analysis of paraffin-embedded human synovial sarcoma (left) and normal testis (right) using SS18-SSX (E9X9V) XP® Rabbit mAb (upper) or SSX (E5A2C) Rabbit mAb (Carboxy-terminal Antigen) #23855 (lower). Note that the fusion protein is not present in normal testis.
    BAF Complex IHC Antibody Sampler Kit: Image 57 Expand Image
    Immunohistochemical analysis of paraffin-embedded human lung carcinoma using SMARCB1/BAF47 (D8M1X) Rabbit mAb in the presence of control peptide (left) or antigen-specific peptide (right).
    BAF Complex IHC Antibody Sampler Kit: Image 58 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 d followed by treatment with β-estradiol (10 nM, 45 min) and either BRM (D9E8B) XP® Rabbit mAb or Normal Rabbit IgG #2729 using SimpleChIP® Enzymatic Chromatin IP Kit (Magnetic Beads) #9003. The enriched DNA was quantified by real-time PCR using SimpleChIP® Human ESR1 Promoter Primers #9673, SimpleChIP® Human pS2 Promoter Primers #9702, and SimpleChIP® Human α Satellite Repeat Primers #4486. The amount of immunoprecipitated DNA in each sample is represented as signal relative to the total amount of input chromatin, which is equivalent to one.
    BAF Complex IHC Antibody Sampler Kit: Image 59 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 d, followed by treatment with β-estradiol (10 nM, 45 min) and either SMARCC1/BAF155 (D7F8S) Rabbit mAb #11956, SMARCB1/BAF47 (D8M1X) Rabbit mAb #91735, or SS18 (D6I4Z) Rabbit mAb, using SimpleChIP® Plus Enzymatic Chromatin IP Kit (Magnetic Beads) #9005. DNA Libraries were prepared using DNA Library Prep Kit for Illumina® (ChIP-seq, CUT&RUN) #56795. SMARCC1/BAF155, SMARCB1/BAF47, and SS18 are all subunits of SWI/SNF complex. The figure shows binding across pS2/TFF1, a known target gene of SWI/SNF complex (see additional figure containing ChIP-qPCR data).
    BAF Complex IHC Antibody Sampler Kit: Image 60 Expand Image
    Immunohistochemical analysis of paraffin-embedded human granulosa cell tumor of the ovary using PBRM1/BAF180 (D4L9X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 61 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from Aska cells and SS18-SSX (E9X9V) XP® Rabbit mAb, using SimpleChIP Plus Enzymatic Chromatin IP Kit (Magnetic Beads) #9005. DNA Libraries were prepared using DNA Library Prep Kit for Illumina #56795. The figure shows binding across HES5, a known target gene of SS18-SSX1 (see additional figure containing ChIP-qPCR data).
    BAF Complex IHC Antibody Sampler Kit: Image 62 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 d, followed by treatment with β-estradiol (10 nM, 45 min) and either SMARCC1/BAF155 (D7F8S) Rabbit mAb #11956, SMARCB1/BAF47 (D8M1X) Rabbit mAb #91735, or SS18 (D6I4Z) Rabbit mAb #21792, using SimpleChIP® Plus Enzymatic Chromatin IP Kit (Magnetic Beads) #9005. DNA Libraries were prepared using DNA Library Prep Kit for Illumina® (ChIP-seq, CUT&RUN) #56795. SMARCC1/BAF155, SMARCB1/BAF47, and SS18 are all subunits of SWI/SNF complex. The figure shows binding across pS2/TFF1, a known target gene of SWI/SNF complex (see additional figure containing ChIP-qPCR data). For additional ChIP-seq tracks, please download the product data sheet.
    BAF Complex IHC Antibody Sampler Kit: Image 63 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 d, followed by treatment with β-estradiol (10 nM, 45 min) and either SMARCC1/BAF155 (D7F8S) Rabbit mAb #11956, SMARCB1/BAF47 (D8M1X) Rabbit mAb #91735, or SS18 (D6I4Z) Rabbit mAb, using SimpleChIP® Plus Enzymatic Chromatin IP Kit (Magnetic Beads) #9005. DNA Libraries were prepared using DNA Library Prep Kit for Illumina® (ChIP-seq, CUT&RUN) #56795. SMARCC1/BAF155, SMARCB1/BAF47, and SS18 are all subunits of SWI/SNF complex. The figure shows binding across chromosome 21 (upper), including pS2/TFF1 (lower), a known target gene of SWI/SNF complex (see additional figure containing ChIP-qPCR data).
    BAF Complex IHC Antibody Sampler Kit: Image 64 Expand Image
    Immunohistochemical analysis of paraffin-embedded Jurkat cell pellet (left, positive) or HCC1143 cell pellet (right, negative) using PBRM1/BAF180 (D4L9X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 65 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from Aska cells and SS18-SSX (E9X9V) XP® Rabbit mAb, using SimpleChIP Plus Enzymatic Chromatin IP Kit (Magnetic Beads) #9005. DNA Libraries were prepared using DNA Library Prep Kit for Illumina #56795. The figure shows binding across chromosome 1 (upper), including HES5 (lower), a known target gene of SS18-SSX1 (see additional figure containing ChIP-qPCR data).
    BAF Complex IHC Antibody Sampler Kit: Image 66 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 d, followed by treatment with β-estradiol (10 nM, 45 min) and either SMARCC1/BAF155 (D7F8S) Rabbit mAb #11956, SMARCB1/BAF47 (D8M1X) Rabbit mAb, or SS18 (D6I4Z) Rabbit mAb #21792, using SimpleChIP® Plus Enzymatic Chromatin IP Kit (Magnetic Beads) #9005. DNA Libraries were prepared using DNA Library Prep Kit for Illumina® (ChIP-seq, CUT&RUN) #56795. SMARCC1/BAF155, SMARCB1/BAF47, and SS18 are all subunits of SWI/SNF complex. The figure shows binding across chromosome 21 (upper), including pS2/TFF1 (lower), a known target gene of SWI/SNF complex (see additional figure containing ChIP-qPCR data).
    BAF Complex IHC Antibody Sampler Kit: Image 67 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 d then treated with β-estradiol (10 nM) for 45 min and either SS18 (D6I4Z) Rabbit mAb or Normal Rabbit IgG #2729 using SimpleChIP® Enzymatic Chromatin IP Kit (Magnetic Beads) #9003. The enriched DNA was quantified by real-time PCR using SimpleChIP® Human ESR1 Promoter Primers #9673, SimpleChIP® Human pS2 Promoter Primers #9702, and SimpleChIP® Human α Satellite Repeat Primers #4486. The amount of immunoprecipitated DNA in each sample is represented as signal relative to the total amount of input chromatin, which is equivalent to one.
    BAF Complex IHC Antibody Sampler Kit: Image 68 Expand Image
    Immunohistochemical analysis of paraffin-embedded normal human testis using PBRM1/BAF180 (D4L9X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 69 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from ASKA cells and either SS18-SSX (E9X9V) XP® Rabbit mAb or Normal Rabbit IgG #2729 using SimpleChIP® Plus Enzymatic Chromatin IP Kit (Magnetic Beads) #9005. The enriched DNA was quantified by real-time PCR using SimpleChIP® Human HES5 Upstream Primers #59885, human SOX8 exon 3 primers, and SimpleChIP® Human α Satellite Repeat Primers #4486. The amount of immunoprecipitated DNA in each sample is represented as signal relative to the total amount of input chromatin, which is equivalent to one. Chromatin pellets were isolated and provided by the Kadoch laboratory.
    BAF Complex IHC Antibody Sampler Kit: Image 70 Expand Image
    Chromatin immunoprecipitations were performed with cross-linked chromatin from MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 d followed by treatment with β-estradiol (10 nM, 45 min) and either SMARCB1/BAF47 (D8M1X) Rabbit mAb or Normal Rabbit IgG #2729 using SimpleChIP® Enzymatic Chromatin IP Kit (Magnetic Beads) #9003. The enriched DNA was quantified by real-time PCR using SimpleChIP® Human ESR1 Promoter Primers #9673, SimpleChIP® Human pS2 Promoter Primers #9702, and SimpleChIP® Human α Satellite Repeat Primers #4486. The amount of immunoprecipitated DNA in each sample is represented as signal relative to the total amount of input chromatin, which is equivalent to one.
    BAF Complex IHC Antibody Sampler Kit: Image 71 Expand Image
    CUT&RUN was performed with MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 d then treated with β-estradiol (10 nM) for 45 min and SS18 (D6I4Z) Rabbit mAb, using CUT&RUN Assay Kit #86652. DNA Libraries were prepared using DNA Library Prep Kit for Illumina® (ChIP-seq, CUT&RUN) #56795. The figure shows binding across DEPTOR, a known target gene of SS18 (see additional figure containing CUT&RUN-qPCR data).
    BAF Complex IHC Antibody Sampler Kit: Image 72 Expand Image
    Immunohistochemical analysis of paraffin-embedded normal human thymus using PBRM1/BAF180 (D4L9X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 73 Expand Image
    CUT&RUN was performed with MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 days followed by treatment with β-estradiol (10 nM, 45 min) and SMARCB1/BAF47 (D8M1X) Rabbit mAb, using CUT&RUN Assay Kit #86652. DNA library was prepared using DNA Library Prep Kit for Illumina® (ChIP-seq, CUT&RUN) #56795. The figure shows binding across TFF1, a known target gene of SMARCB1 (see additional figure containing CUT&RUN-qPCR data).
    BAF Complex IHC Antibody Sampler Kit: Image 74 Expand Image
    Immunoprecipitation of BRM protein from HeLa cell extracts. Lane 1 is 10% input, lane 2 is Rabbit (DA1E) mAb IgG XP® Isotype Control #3900, and lane 3 is BRM (D9E8B) XP® Rabbit mAb. Western blot analysis was performed using BRM (D9E8B) XP® Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 75 Expand Image
    CUT&RUN was performed with MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 d then treated with β-estradiol (10 nM) for 45 min and SS18 (D6I4Z) Rabbit mAb, using CUT&RUN Assay Kit #86652. DNA Libraries were prepared using DNA Library Prep Kit for Illumina® (ChIP-seq, CUT&RUN) #56795. The figures show binding across chromosome 8 (upper), including DEPTOR (lower), a known target gene of SS18 (see additional figure containing CUT&RUN-qPCR data).
    BAF Complex IHC Antibody Sampler Kit: Image 76 Expand Image
    Immunohistochemical analysis of paraffin-embedded normal human thyroid using PBRM1/BAF180 (D4L9X) Rabbit mAb.
    BAF Complex IHC Antibody Sampler Kit: Image 77 Expand Image
    CUT&RUN was performed with MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 days followed by treatment with β-estradiol (10 nM, 45 min) and SMARCB1/BAF47 (D8M1X) Rabbit mAb, using CUT&RUN Assay Kit #86652. DNA Libraries were prepared using DNA Library Prep Kit for Illumina® (ChIP-seq, CUT&RUN) #56795. The figures show binding across chromosome 21 (upper), including TFF1 (lower), a known target gene of SMARCB1 (see additional figure containing CUT&RUN-qPCR data).
    BAF Complex IHC Antibody Sampler Kit: Image 78 Expand Image
    CUT&RUN was performed with MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 d, followed by treatment with β-estradiol (10 nM, 45 min) and either SS18 (D6I4Z) Rabbit mAb or Rabbit (DA1E) mAb IgG XP® Isotype Control (CUT&RUN) #66362, using CUT&RUN Assay Kit #86652. The enriched DNA was quantified by real-time PCR using human HMCN1 exon 96 primers, human TFF1/pS2 promoter primers, human DEPTOR intron 4 primers, and ITM2A upstream primers. The amount of immunoprecipitated DNA in each sample is represented as signal relative to the total amount of input chromatin, which is equivalent to one.
    BAF Complex IHC Antibody Sampler Kit: Image 79 Expand Image
    CUT&RUN was performed with MCF7 cells grown in phenol red free medium and 5% charcoal stripped FBS for 4 days followed by treatment with β-estradiol (10 nM, 45 min) and either SMARCB1/BAF47 (D8M1X) Rabbit mAb or Rabbit (DA1E) mAb IgG XP® Isotype Control (CUT&RUN) #66362, using CUT&RUN Assay Kit #86652. The enriched DNA was quantified by real-time PCR using SimpleChIP® Human ESR1 Promoter Primers #9673, SimpleChIP® Human pS2 Promoter Primers #9702, and SimpleChIP® Human α Satellite Repeat Primers #4486. The amount of immunoprecipitated DNA in each sample is represented as signal relative to the total amount of input chromatin, which is equivalent to one.