Revision 1

#80523Store at -20C

1 Kit

(5 x 20 microliters)

Cell Signaling Technology

Orders: 877-616-CELL (2355) [email protected]

Support: 877-678-TECH (8324)

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3 Trask LaneDanversMassachusetts01923USA
For Research Use Only. Not for Use in Diagnostic Procedures.
Product Includes Product # Quantity Mol. Wt Isotype/Source
YTHDF1 (E9P6V) Rabbit mAb 57530 20 µl 70 kDa Rabbit IgG
YTHDF2 (E2I2H) Rabbit mAb 71283 20 µl 65 kDa Rabbit IgG
YTHDF3 Antibody 24206 20 µl 70 kDa Rabbit 
YTHDC1 (E4I9E) Rabbit mAb 77422 20 µl 110 kDa Rabbit IgG
YTHDC2 (E6H7U) Rabbit mAb 46324 20 µl 160 kDa Rabbit IgG
Anti-rabbit IgG, HRP-linked Antibody 7074 100 µl Goat 

Please visit cellsignal.com for individual component applications, species cross-reactivity, dilutions, protocols, and additional product information.

Description

The N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit provides an economical means of evaluating total levels of YTH domain-containing proteins. The kit includes enough antibodies to perform two western blot experiments with each primary antibody.

Storage

Supplied in 10 mM sodium HEPES (pH 7.5), 150 mM NaCl, 100 µg/mL BSA, 50% glycerol, and less than 0.02% sodium azide. Store at –20°C. Do not aliquot the antibodies.

Background

N6-methyladenosine (m6A) is an abundant RNA modification that plays an important role in mRNA splicing, processing, and stability. The m6A modification is specifically recognized by YT521B homology (YTH) domain-containing proteins, consisting of five members in mammals: YTH domain-containing proteins 1 and 2 (YTHDC1 and YTHDC2), and YTH domain-containing family proteins 1, 2, and 3 (YTHDF1, YTHDF2, and YTHDF3) (1). YTHDC1, also known as splicing factor YT521, regulates alternative splicing by functioning as a key regulator of exon-inclusion or exon-skipping. YTHDC1 promotes exon-inclusion by recruiting pre-mRNA splicing factor SRSF3 to regions containing m6A, while repressing exon-skipping by blocking SRSF10 binding to these same regions (2). Increased expression of YTHDC1 promotes malignant endometrial carcinoma (EC) through alternative splicing of vascular endothelial growth factor-A (VEGF-A), resulting in an increase in VEGF-165 isoform and increased EC cell invasion (3). YTHDC2 functions to enhance the translation efficiency of target mRNAs and may play a role in spermatogenesis (4). All three members of the YTHDF family are paralogs that share similar sequence and domain structure, including the conserved C-terminal YTH domain that specifically interacts with m6A (5). Despite these similarities, recent studies suggest that YTHDF proteins are involved in distinct regulatory functions with minimal overlap. Specifically, YTHDF1 binding has been reported to promote enhanced mRNA translation, but has no measurable effect on mRNA stability (6). Conversely, YTHDF2 binding appears to promote mRNA degradation, but has minimal effect on translation efficiency (7). The function of YTHDF3 is less clear, but it has been proposed to function as an auxiliary protein for both YTHDF1 and YTHDF2, helping to promote either increased mRNA translation or decay, respectively (8). Additional studies offer a different viewpoint, suggesting that all three YTHDF proteins initiate mRNA degradation, or mediate increased mRNA stability and protein expression, promoting the idea that these proteins may carry out similar rather than distinct functions (9,10).

  1. Xu, C. et al. (2015) J Biol Chem 290, 24902-13.
  2. Xiao, W. et al. (2016) Mol Cell 61, 507-519.
  3. Zhang, B. et al. (2015) Tumour Biol 37, 15543-9.
  4. Hsu, P.J. et al. (2017) Cell Res 27, 1115-1127.
  5. Meyer, K.D. and Jaffrey, S.R. (2017) Annu Rev Cell Dev Biol 33, 319-342.
  6. Wang, X. et al. (2015) Cell 161, 1388-99.
  7. Wang, X. et al. (2014) Nature 505, 117-20.
  8. Shi, H. et al. (2017) Cell Res 27, 315-328.
  9. Du, H. et al. (2016) Nat Commun 7, 12626.
  10. Kennedy, E.M. et al. (2016) Cell Host Microbe 19, 675-85.

Background References

    Trademarks and Patents

    Cell Signaling Technology is a trademark of Cell Signaling Technology, Inc.
    All other trademarks are the property of their respective owners. Visit cellsignal.com/trademarks for more information.

    Limited Uses

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    Products are labeled with For Research Use Only or a similar labeling statement and have not been approved, cleared, or licensed by the FDA or other regulatory foreign or domestic entity, for any purpose. Customer shall not use any Product for any diagnostic or therapeutic purpose, or otherwise in any manner that conflicts with its labeling statement. Products sold or licensed by CST are provided for Customer as the end-user and solely for research and development uses. Any use of Product for diagnostic, prophylactic or therapeutic purposes, or any purchase of Product for resale (alone or as a component) or other commercial purpose, requires a separate license from CST. Customer shall (a) not sell, license, loan, donate or otherwise transfer or make available any Product to any third party, whether alone or in combination with other materials, or use the Products to manufacture any commercial products, (b) not copy, modify, reverse engineer, decompile, disassemble or otherwise attempt to discover the underlying structure or technology of the Products, or use the Products for the purpose of developing any products or services that would compete with CST products or services, (c) not alter or remove from the Products any trademarks, trade names, logos, patent or copyright notices or markings, (d) use the Products solely in accordance with CST Product Terms of Sale and any applicable documentation, and (e) comply with any license, terms of service or similar agreement with respect to any third party products or services used by Customer in connection with the Products.

    Revision 1
    #80523

    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit

    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 1 Expand Image
    Immunoprecipitation of YTHDF3 protein from 293T cell extracts. Lane 1 is 10% input, lane 2 is Normal Rabbit IgG #2729, and lane 3 is YTHDF3 Antibody. Western blot analysis was performed using YTHDF3 Antibody. Anti-rabbit IgG, HRP-linked Antibody #7074 was used as the secondary antibody.
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 2 Expand Image
    Western blot analysis of extracts from 293T cells, transfected with control siRNA (-) or YTHDF3 siRNA (+), using YTHDF3 Antibody (upper) or β-Actin (D6A8) Rabbit mAb #8457 (lower).
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 3 Expand Image
    Immunoprecipitation of YTHDC2 protein from HeLa cell extracts. Lane 1 is 10% input, lane 2 is Rabbit (DA1E) mAb IgG XP® Isotype Control #3900, and lane 3 is YTHDC2 (E6H7U) Rabbit mAb. Western blot analysis was performed using YTHDC2 (E6H7U) Rabbit mAb. Anti-rabbit IgG, HRP-linked Antibody #7074 was used as the secondary antibody.
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 4 Expand Image
    Western blot analysis of extracts from 293T cells, either transfected with non-targeting siRNA (293T siNT) or siRNA targeting YTHDC2 (293T siYTHDC2), and various other cell lines using YTHDC2 (E6H7U) Rabbit mAb (upper) and α-Actinin (D6F6) XP® Rabbit mAb #6487 (lower).
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 5 Expand Image
    Immunoprecipitation of YTHDF1 protein from MCF7 cell extracts. Lane 1 is 10% input, lane 2 is Rabbit (DA1E) mAb IgG XP® Isotype Control #3900, and lane 3 is YTHDF1 (E9P6V) Rabbit mAb. Western blot analysis was performed using YTHDF1 (E9P6V) Rabbit mAb. Mouse Anti-Rabbit IgG (Light-Chain Specific) (D4W3E) mAb (HRP Conjugate) #93702 was used as the secondary antibody.
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 6 Expand Image
    Western blot analysis of extracts from HCT 116 cells, transfected with control siRNA (-) or YTHDF1 siRNA (+), using YTHDF1 (E9P6V) Rabbit mAb (upper) or GAPDH (D16H11) XP® Rabbit mAb #5174 (lower).
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 7 Expand Image
    Confocal immunofluorescent analysis of HCT 116 cells, mock transfected (left, high-expressing) or transfected with YTHDF1 siRNA (right, low-expressing), using YTHDF1 (E9P6V) Rabbit mAb (green) and DAPI #4083 (blue).
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 8 Expand Image
    After the primary antibody is bound to the target protein, a complex with HRP-linked secondary antibody is formed. The LumiGLO® is added and emits light during enzyme catalyzed decomposition.
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 9 Expand Image
    Immunoprecipitation of YTHDF2 protein from 293T cell extracts. Lane 1 is 10% input, lane 2 is Rabbit (DA1E) mAb IgG XP® Isotype Control #3900, and lane 3 is YTHDF2 (E2I2H) Rabbit mAb. Western blot analysis was performed using YTHDF2 (E2I2H) Rabbit mAb. Mouse Anti-rabbit IgG (Conformation Specific) (L27A9) mAb (HRP Conjugate) #5127 was used as the secondary antibody.
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 10 Expand Image
    Western blot analysis of extracts from 293T cells, either transfected with non-targeting siRNA (siNT) or siRNA targeting YTHDF2 (siYTHDF2), and various cell lines using YTHDF2 (E2I2H) Rabbit mAb (upper) and β-Actin (D6A8) Rabbit mAb #8457 (lower).
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 11 Expand Image
    Confocal immunofluorescent analysis of HCT 116 cells mock transfected (left, high-expressing) or transfected with siRNA directed against human YTHDF2 (right, low-expressing) using YTHDF2 (E2I2H) Rabbit mAb (green). Actin filaments were labeled with DyLight 554 Phalloidin #13054 (red). Samples were mounted in ProLong® Gold Antifade Reagent with DAPI #8961 (blue).
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 12 Expand Image
    Confocal immunofluorescent analysis of mouse hippocampus using YTHDF2 (E2I2H) Rabbit mAb (red) and GFAP (GA5) Mouse mAb (Alexa Fluor® 488 Conjugate) #3655 (green). Actin filaments were labeled with DyLight 650 Phalloidin #12956 (cyan pseudocolor). Samples were mounted in ProLong® Gold Antifade Reagent with DAPI #8961 (blue).
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 13 Expand Image
    Confocal immunofluorescent analysis of mouse medulla oblongata using YTHDF2 (E2I2H) Rabbit mAb (red) and GFAP (GA5) Mouse mAb (Alexa Fluor® 488 Conjugate) #3655 (green). Samples were mounted in ProLong® Gold Antifade Reagent with DAPI #8961 (blue).
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 14 Expand Image
    Confocal immunofluorescent analysis of mouse retina using YTHDF2 (E2I2H) Rabbit mAb (red) and GFAP (GA5) Mouse mAb (Alexa Fluor® 488 Conjugate) #3655 (green). Actin filaments were labeled with DyLight 650 Phalloidin #12956 (cyan pseudocolor). Samples were mounted in ProLong® Gold Antifade Reagent with DAPI #8961 (blue).
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 15 Expand Image
    Confocal Immunofluorescent analysis of U-2 OS cells untreated (left) or treated with sodium arsenite (500 µM, 1 hr) (right) using YTHDF2 (E2I2H) Rabbit mAb (green) and G3BP1 (TT-Y) Mouse mAb (red). After blocking free secondary antibody binding sites with Rabbit (DA1E) mAb IgG XP® Isotype Control #3900, the cells were then labeled using GM130 (D6B1) XP® Rabbit mAb (Alexa Fluor® 647 Conjugate) #59890 (cyan pseudocolor). Samples were mounted in ProLong® Gold Antifade Reagent with DAPI #8961 (blue).
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 16 Expand Image
    Western blot analysis of extracts from various cell lines using YTHDC1 (E4I9E) Rabbit mAb.
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 17 Expand Image
    Western blot analysis of extracts from various cell lines using YTHDF3 Antibody.
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 18 Expand Image
    Western blot analysis of extracts from various cell lines and tissues using YTHDC2 (E6H7U) Rabbit mAb.
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 19 Expand Image
    Western blot analysis of extracts from various cell lines using YTHDF1 (E9P6V) Rabbit mAb.
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 20 Expand Image
    Confocal immunofluorescent analysis of U-2 OS cells, untreated (left) or treated with sodium arsenite (right; 500 µM, 1 hr), using YTHDF1 (E9P6V) Rabbit mAb (green), DyLight 650 Phalloidin #12956 (red), and DAPI #4083 (blue).
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 21 Expand Image
    Immunoprecipitation of YTHDC1 from HCT 116 cell extracts. Lane 1 is 10% input, lane 2 is Rabbit (DA1E) mAb IgG XP® Isotype Control #3900, and lane 3 is YTHDC1 (E4I9E) Antibody. Western blot analysis was performed using YTHDC1 (E4I9E) Rabbit mAb.
    N6-Methyladenosine (m6A) Binding Protein Antibody Sampler Kit: Image 22 Expand Image
    Western blot analysis of extracts from various cell lines using YTHDF2 (E2I2H) Rabbit mAb.